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Forum: Bioinformatics 12-18-2018, 07:35 AM
Replies: 3
Views: 6,637
Posted By fkrueger
Yes, this is normal. Paired-end BAM files have...

Yes, this is normal. Paired-end BAM files have Read 1 and Read 2 on consecutive lines, so there is only one file per read pair.
Forum: Bioinformatics 06-29-2018, 12:27 AM
Replies: 3
Views: 6,637
Posted By fkrueger
Hi Hedi86, for RRBS the command would be: ...

Hi Hedi86,

for RRBS the command would be:

trim_galore --rrbs --paired r1.fastq.gz r2.fastq.gz

Which version of Trim Galore were you using (the latest one is v0.5.0,...
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