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Forum: Bioinformatics 03-28-2016, 10:22 PM
Replies: 4
Views: 3,451
Posted By Alphabets
I want to call STRs with lobSTR dealing with the...

I want to call STRs with lobSTR dealing with the BAM file.

I run lobSTR with the paired-end BAM file (http://melissagymrek.com/lobstr-code/best-practices-wgs-wes.html#pairedbam) and it occurs many...
Forum: Bioinformatics 03-28-2016, 07:30 PM
Replies: 4
Views: 3,451
Posted By Alphabets
Thank you for your reply! I read your reply...

Thank you for your reply!

I read your reply carefully but there is some difficulty for me to understand.

Could you explain the three reads more easy to understand? or how can I solve the...
Forum: Bioinformatics 03-28-2016, 06:38 PM
Replies: 4
Views: 3,451
Posted By Alphabets
Three reads with the same name in the BAM file

Hi all,

I am dealing with the paired-end BAM file, and come up with many warnings like this:

WARNING: Could not find pair for HWI-ST430:177:2:1:4979:15503#0
WARNING: Could not find pair for...
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