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Search: Posts Made By: marianaboroni
Forum: Bioinformatics 02-18-2014, 06:43 AM
Replies: 6
Views: 1,939
Posted By marianaboroni
Dear Olga, Did you hear back from someone ? ...

Dear Olga,

Did you hear back from someone ?
I'm also interested in the answers of your questions...
Forum: Bioinformatics 06-25-2013, 10:32 AM
Replies: 2
Views: 1,025
Posted By marianaboroni
DEXSeq output

Hi!

I've used the DESeq package and now I'm trying the DEXSeq one.

In the DESeq package I can access the baseMean, baseMeanA, baseMeanB values after doing the analysis as a output result, but...
Forum: Bioinformatics 03-13-2013, 11:48 AM
Replies: 15
Views: 4,594
Posted By marianaboroni
Hi! I'm trying to use the pipeline tophat2 ->...

Hi!
I'm trying to use the pipeline tophat2 -> HTSEq -> DEXSeq, but I'm stuck on the DEXSEq workflow!

Here is what I did:

1) I ran TopHat2 using a junc file:


2) I converted bam to the sam...
Forum: Bioinformatics 03-13-2013, 11:43 AM
Replies: 0
Views: 712
Posted By marianaboroni
Problem with DEXSeq read.HTSeqCounts

Hi!
I'm trying to use the pipeline tophat2 -> HTSEq -> DEXSeq, but I'm stuck on the DEXSEq workflow!

Here is what I did:

1) I ran TopHat2 using a junc file:


2) I converted bam to the sam...
Forum: Bioinformatics 08-03-2012, 12:06 PM
Replies: 2
Views: 2,142
Posted By marianaboroni
I'm facing the same problem: If I run: ...

I'm facing the same problem:

If I run:


But If I take a look on the gff file, there isn't a duplicate ID!

My file:
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