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Forum: Bioinformatics 12-08-2009, 09:13 AM
Replies: 7
Views: 4,328
Posted By Cole Trapnell
Yes, sorry. That's what I get for responding...

Yes, sorry. That's what I get for responding before coffee.
Forum: Bioinformatics 12-08-2009, 08:08 AM
Replies: 7
Views: 4,328
Posted By Cole Trapnell
You probably want: cuffcompare -r...

You probably want:
cuffcompare -r geneannotations.gtf 123.transcripts.gtf

Looking then at the out.tracking file will then tell you how the Ensembl transcripts (along with whatever new...
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