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Forum: Bioinformatics 05-08-2015, 04:13 PM
Replies: 4
Views: 3,342
Posted By rflrob
I'm not familiar with this "do" module you seem...

I'm not familiar with this "do" module you seem to be using, but I'm pretty sure that passing a list is the equivalent of spaces on the command line. For instance, in the original cuffdiff call,...
Forum: Bioinformatics 05-07-2015, 04:51 PM
Replies: 4
Views: 3,342
Posted By rflrob
It looks to me like you're perhaps missing a...

It looks to me like you're perhaps missing a comma after cfg.project["samples"][0]["files"]["bam"]. As a general debugging strategy, when you have massive blocks of code like that, it's often easier...
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