SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 5 of 5
Search took 0.00 seconds.
Search: Posts Made By: user 31888
Forum: Bioinformatics 01-29-2016, 06:13 PM
Replies: 7
Views: 4,237
Posted By user 31888
maybe see: ...

maybe see:
https://support.bioconductor.org/p/74677/#75002

But I ended up doing a fresh install of pretty much everything (R, Python, Bioconductor and associated packages), and it worked.
Forum: Bioinformatics 11-17-2015, 01:33 PM
Replies: 7
Views: 4,237
Posted By user 31888
Stupid thought: could it be something like EOF or...

Stupid thought: could it be something like EOF or other formatting issue that differs between my sample.bam files and TxDb.Hsapiens.UCSC.hg19.knownGene?

(I am using a Linux cluster)
Forum: Bioinformatics 11-17-2015, 01:28 PM
Replies: 7
Views: 4,237
Posted By user 31888
My mistake, sorry. It is actually...

My mistake, sorry.

It is actually 'sample_2.bam.bai' (I edited my previous post)
Forum: Bioinformatics 11-17-2015, 01:12 PM
Replies: 7
Views: 4,237
Posted By user 31888
Thanks ginger for your reply ! Here are the...

Thanks ginger for your reply !

Here are the outputs:
> str(exByGn)
Formal class 'GRangesList' [package "GenomicRanges"] with 5 slots
..@ unlistData :Formal class 'GRanges' [package...
Forum: Bioinformatics 11-16-2015, 04:18 PM
Replies: 7
Views: 4,237
Posted By user 31888
GAGE pathway analysis (R/Bioconductor): summarizeOverlaps error

I am trying to use the GAGE pathway analysis tutorial (https://bioconductor.org/packages/release/bioc/vignettes/gage/inst/doc/RNA-seqWorkflow.pdf) with 3 samples of paired-end RNA-Seq reads (placed...
Showing results 1 to 5 of 5

 


All times are GMT -8. The time now is 04:17 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO