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Forum: Bioinformatics 05-07-2015, 11:51 PM
Replies: 4
Views: 3,342
Posted By bvk
Thanks for the reply. You may be right in one...

Thanks for the reply. You may be right in one case. But I want to run this for groups.

cfg.project["samples"][0]["files"]["bam"] is group1
cfg.project["samples"][1]["files"]["bam"] is group2

...
Forum: Bioinformatics 05-07-2015, 07:16 AM
Replies: 4
Views: 3,342
Posted By bvk
python error in cuffdiff script

I used this in command line:

cuffdiff -o diff_out4 -b ../genome/ce10.fa -p 2 -L larval,early -u merged_asm/merged.gtf ../tophat/em/SRR493359_60_61_thout/accepted_hits.bam...
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