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Forum: Genomic Resequencing 04-30-2017, 12:03 PM
Replies: 0
Views: 2,501
Posted By jol.espinoz
How to generate VCF from HISAT2 pre-built SNP index?

My ultimate goal is to get a (n= samples, m= SNPs) data matrix. My plan was to use HISAT2 for the mapping, VCF tools for the vcf file, and then parse it to generate the data matrix I can actually...
Forum: Metagenomics 03-01-2017, 12:14 PM
Replies: 1
Views: 2,509
Posted By jol.espinoz
Advice on assembling very large metagenomic dataset?

I need to assemble a large metagenomics dataset from Illumina NextSeq (https://www.illumina.com/systems/sequencing-platforms/nextseq.html) reads. My read depth is approximately 20 million reads per...
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