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Search: Posts Made By: yumtaoist
Forum: Bioinformatics 05-29-2012, 07:42 PM
Replies: 3
Views: 2,575
Posted By yumtaoist
Perhaps the new version of bowtie2 can run...

Perhaps the new version of bowtie2 can run successfullly
Forum: Bioinformatics 03-24-2012, 05:52 AM
Replies: 1
Views: 1,451
Posted By yumtaoist
The ChrUn should be included. Although it can not...

The ChrUn should be included. Although it can not be located to the chromsome, it is part of the genome. Many reads are coming from it.
Forum: Bioinformatics 03-10-2012, 01:29 AM
Replies: 3
Views: 2,422
Posted By yumtaoist
dpryan is right, the arguments are case sensitive

dpryan is right, the arguments are case sensitive
Forum: Bioinformatics 02-07-2012, 03:40 AM
Replies: 21
Views: 10,014
Posted By yumtaoist
Is your reference very short?

Is your reference very short?
Forum: Bioinformatics 01-20-2012, 04:12 PM
Replies: 7
Views: 16,276
Posted By yumtaoist
Smile Thank You Very Much! This is very useful!

Thank You Very Much!

This is very useful!
Forum: Bioinformatics 01-03-2012, 05:43 PM
Replies: 12
Views: 3,132
Posted By yumtaoist
Genewise is used very frequently

Genewise is used very frequently
Forum: Bioinformatics 01-03-2012, 06:20 AM
Replies: 6
Views: 3,166
Posted By yumtaoist
"broken pipe" means the network is disconnected....

"broken pipe" means the network is disconnected. This is very common after a long time...
Forum: Bioinformatics 01-03-2012, 05:58 AM
Replies: 8
Views: 13,292
Posted By yumtaoist
If you don't care about efficiency, a computer...

If you don't care about efficiency, a computer with four CPUs is enough. But the memory is very important, 16GB RAM is necessary. What's more, you can set another 16GB hard disk as SWAP, I think this...
Forum: Bioinformatics 12-30-2011, 05:51 PM
Replies: 7
Views: 16,276
Posted By yumtaoist
Bowtie2 cannot read gzip format files

Hey, everyone!

The help document of bowtie2 have said that the files of reads could be gzip'ed.

When I use the paired reads and try the argument ( -1 <m1> -2 <m2>), the bowtie2 can read the...
Forum: Bioinformatics 12-20-2011, 02:24 AM
Replies: 8
Views: 2,450
Posted By yumtaoist
Great

It's great!
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