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Forum: Bioinformatics 04-23-2010, 07:07 AM
Replies: 10
Views: 9,270
Posted By poisson200
Hi Oliviera. Sorry, I did not explain well or...

Hi Oliviera.
Sorry, I did not explain well or you misunderstand me (or I don't fully understand TopHat). I meant it is able to map a read that spans an an intron and did not refer to paired end,...
Forum: Bioinformatics 04-23-2010, 05:35 AM
Replies: 10
Views: 9,270
Posted By poisson200
There are several considerations

Hello Oliviera/Joa,
I think BLAT is another good option in complement to TopHat. TopHat, if I understand what I read, is good at mapping reads that map continuously to the genome using Bowtie and is...
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