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Search: Posts Made By: rvgill
Forum: Bioinformatics 10-28-2016, 05:57 AM
Replies: 8
Views: 3,471
Posted By rvgill
Yes, and it worked wonderfully I was able to...

Yes, and it worked wonderfully I was able to blast my DB and Query sequence together. I am new to all of this and I have been working to solve this for about 4 weeks before finding this website. My...
Forum: Bioinformatics 10-28-2016, 05:20 AM
Replies: 8
Views: 3,471
Posted By rvgill
No, when you end with a slash it created a...

No, when you end with a slash it created a separate folder with all of my output files within it names MV1SDB_a. That is not my issue here. But thank you for trying to trouble shoot that.

From a...
Forum: Bioinformatics 10-26-2016, 05:33 AM
Replies: 4
Views: 1,113
Posted By rvgill
Making local Database

Hello,

I am making my own database out of fasta files and need help on how to re-format my command line when creating these databases.

makeblastdb -in test.fasta -dbtype nucl -parse_seqids -out...
Forum: Bioinformatics 10-26-2016, 05:05 AM
Replies: 8
Views: 3,471
Posted By rvgill
So I did that and still got the same answer. I...

So I did that and still got the same answer. I needs the .nal file, thats what blast looks for as the Nucleotide database

blastn -query HPV2-C2_E1.fasta -db MV1SDB_a -out testblastout.txt

BLAST...
Forum: Bioinformatics 10-25-2016, 02:17 PM
Replies: 1
Views: 1,137
Posted By rvgill
Smile getting .nal files from blast

Hello,

So I am making my own databases from fasta files using Blast version ncbi-blast-2.5.0+.dmg and getting an error that is linking back to by database creation by not having a .nal file...
Forum: Bioinformatics 10-19-2016, 06:30 AM
Replies: 8
Views: 3,471
Posted By rvgill
Exclamation NCBI-Blast Database Error. I NEED to create .nal file

Hello,

So I am making my own databases from fasta files using Blast version ncbi-blast-2.5.0+.dmg and getting an error that is linking back to by database creation by not having a .nal file...
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