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Search: Posts Made By: HGV
Forum: Bioinformatics 09-22-2014, 10:47 AM
Replies: 636
Views: 126,103
Posted By HGV
bbmap hitstats - unambiguous Hits

Hi Brian
I was looking at the hitstats files and I realized that the %unambiguousReads
can add up to more than 100%, and similarly the unambiguousReads count can be higher than the total input...
Forum: Bioinformatics 09-17-2014, 01:16 PM
Replies: 636
Views: 126,103
Posted By HGV
pairlen= broken in 33.41

Hi Brian

I was using pairlen=1200 to limit insert sizes for paired end mapping and with the newest version 33.41 bbmap reports unkown option, while in 33.40b it used to work. What has happened?
...
Forum: Bioinformatics 07-09-2014, 03:41 AM
Replies: 636
Views: 126,103
Posted By HGV
rel. 33.04 fails

Hi Brian
I constantly update bbmap and now ran into problems when using the newest release 33.04 - it performs the mapping, but then fails during the Results statistics reporting, when 32.23 reports...
Forum: Bioinformatics 04-15-2014, 08:30 AM
Replies: 636
Views: 126,103
Posted By HGV
problems with bbmap switches

Hi Brian,
Very decent mapper that you wrote, and supergreat that it is finally
available .

I was playing around with bbmap, sooo many cool features and an impressive
speed! But I could not...
Showing results 1 to 4 of 4

 


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