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Forum: Genomic Resequencing 10-18-2015, 04:44 AM
Replies: 5
Views: 14,791
Posted By profbiot
The lowercase letters have poor mapping quality. ...

The lowercase letters have poor mapping quality. The non-ATGC letters are IUPAC codes for positions with more than one base observed.
http://www.bioinformatics.org/sms2/iupac.html
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