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Forum: Bioinformatics 03-25-2011, 12:12 AM
Replies: 6
Views: 4,510
Posted By maubp
It is a non trivial task since the SAM/BAM format...

It is a non trivial task since the SAM/BAM format isn't a multiple sequence alignment but a collection of pairwise alignments to the reference. The problem comes with conflicting inserts.

e.g....
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