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Forum: Bioinformatics 03-09-2018, 06:23 AM
Replies: 304
Views: 82,005
Posted By cb841011
Hey GenoMax, Thank you for the reply! I had...

Hey GenoMax,

Thank you for the reply! I had not heard of bbsplit. Unfortunately, I dont have genomic sequence of the plant. Only the fungus.

How does this change my options?

Thanks!
Forum: Bioinformatics 03-08-2018, 02:42 PM
Replies: 304
Views: 82,005
Posted By cb841011
Arrow Can genome be used to filter RNA-seq reads?

Hi!

I have plant RNA-seq reads that are contaminated with fungal reads. I have access to a draft genome of the fungus. Is it possible to use BBduk or Seal to filter fungal RNA reads away from...
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