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Search: Posts Made By: newbie2this
Forum: Bioinformatics 11-10-2012, 06:02 AM
Replies: 0
Views: 1,625
Posted By newbie2this
parsing blast output using filters using regular perl

So I have written a script for perl (I do not have BioPerl) to parse a blast output using filters. Example, I only want to extract hits with alignment lengths, %id,etc greater than a cutoff point. I...
Forum: Bioinformatics 11-07-2012, 05:45 AM
Replies: 9
Views: 15,280
Posted By newbie2this
with some minor changea and addition to suit my...

with some minor changea and addition to suit my objective, this worked like a charm. Thanks for all the help.
Forum: Bioinformatics 11-06-2012, 01:42 PM
Replies: 9
Views: 15,280
Posted By newbie2this
thanks bunches for the help but I still wasn`t...

thanks bunches for the help but I still wasn`t able to get my script to run the way i want it to.
Forum: Bioinformatics 11-06-2012, 07:26 AM
Replies: 9
Views: 15,280
Posted By newbie2this
Parsing multi fasta sequence file using Perl

Hello,
I am very new to Perl scripting and scripting in general. I am trying to extract information from a multi fasta file to an output file. I have constructed a script but it isn't giving me the...
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