SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 4 of 4
Search took 0.00 seconds.
Search: Posts Made By: sachitad
Forum: Bioinformatics 02-15-2013, 01:40 AM
Replies: 4
Views: 3,441
Posted By sachitad
I already have .fa file in Bowtie2Index directory...

I already have .fa file in Bowtie2Index directory and it's not empty:

These are files with reference gnome:

genome.1.bt2 genome.2.bt2 genome.4.bt2 genome.fa.fai genome.rev.2.bt2 ...
Forum: Bioinformatics 02-14-2013, 09:21 PM
Replies: 4
Views: 3,441
Posted By sachitad
I tried with all the possible data but am getting...

I tried with all the possible data but am getting the same error about junction. Is it because of the reference genome?
Forum: Bioinformatics 02-14-2013, 04:43 AM
Replies: 4
Views: 3,441
Posted By sachitad
Tophat2 returns empty junction file: Warning: junction database is empty!

I am using Tophat2 V2.0.7 with this command:
tophat2 -p 1 --library-type fr-unstranded --segment-length 12 /data/rathi/Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index/genome...
Forum: RNA Sequencing 10-03-2012, 02:27 AM
Replies: 2
Views: 1,840
Posted By sachitad
How to integrate Trim Galore in Galaxy?

Hello. I have downloaded and installed Trim Galore in my local machine. Now I want to integrate it into Galaxy. I know the procedure to add tool into Galaxy and I have added quite a few: Bismark,...
Showing results 1 to 4 of 4

 


All times are GMT -8. The time now is 01:48 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO