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Search: Posts Made By: ramadatta.88
Forum: Bioinformatics 10-12-2011, 08:43 PM
Replies: 10
Views: 7,160
Posted By ramadatta.88
problem installing velvet

Hi RachelWu, mandar.sahasrabuddhe

did any of you resolved the problem.PLease let me know.I m new to assembling and i m facing the same error..

src/readSet.c:35:18: error: zlib.h: No such file...
Forum: De novo discovery 10-06-2011, 01:26 AM
Replies: 16
Views: 15,025
Posted By ramadatta.88
Getting number of reads in each contig: I...

Getting number of reads in each contig:

I used contrib/extraContigReads.pl in velvet to make contig file and its corresponding reads. After making all the contig files...
Forum: Bioinformatics 10-05-2011, 11:07 PM
Replies: 3
Views: 2,018
Posted By ramadatta.88
thank you swbarnes2. Yeah. I can see two...

thank you swbarnes2.

Yeah. I can see two '307AEAAXX:4:1:1591:659' patterns from the file. I can understand it is PE data file.

But, why did the length reduce to 84 in forward ,84 in reverse...
Forum: Bioinformatics 10-04-2011, 10:53 PM
Replies: 3
Views: 2,018
Posted By ramadatta.88
query: obtaining SE and PE files from fastq

Hi all, I am a bit new to assembling stuff. Please spare me and answers even if my questions looks a bit silly.

I obtained an .SRA file ( 200bp PE Illumina reads ) from NCBI traces archive....
Forum: Bioinformatics 10-04-2011, 08:23 PM
Replies: 2
Views: 2,781
Posted By ramadatta.88
thank you..My doubt is cleared..:)

thank you..My doubt is cleared..:)
Forum: Bioinformatics 10-03-2011, 11:43 PM
Replies: 2
Views: 2,781
Posted By ramadatta.88
Query on K-mer using in velvet

Hi, I am newbie to NGS. TO assemble a genome i started using velvet. During which I came across a term called 'K-mer' which means the overlapping segment in the reads. I would like to know that if...
Forum: Introductions 09-26-2011, 02:25 AM
Replies: 0
Views: 2,216
Posted By ramadatta.88
Obtaining unique sequence tag file from fastQ format

Hello everybody, I am a newbie to NGS. I was given some data files (.sra/fastq files).I would please like to know how i can get each of the sequence read and its corresponding frequency in the file....
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