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Forum: Bioinformatics 02-25-2019, 05:32 PM
Replies: 347
Views: 185,344
Posted By aushev
sorry for another dummy question, but I really...

sorry for another dummy question, but I really want to understand how bbduk works and currently I'm having troubles with that... Below I list example of 11 reads containing adapter sequence which I...
Forum: Bioinformatics 02-25-2019, 04:14 PM
Replies: 347
Views: 185,344
Posted By aushev
yes, that's what I wanted - but I just wanted...

yes, that's what I wanted - but I just wanted also to understand what is the difference between bbduk and bbsplit for this purpose.
Forum: Bioinformatics 02-25-2019, 01:30 PM
Replies: 347
Views: 185,344
Posted By aushev
Thank you @GenoMax! What would be the main...

Thank you @GenoMax!
What would be the main advantage of using bbsplit instead of bbduk? As I understand, BBSplit internally uses BBMap, unlike BBDuk - but what would it practically mean? In my...
Forum: Bioinformatics 02-25-2019, 11:01 AM
Replies: 347
Views: 185,344
Posted By aushev
Hello, I was trying to filter out rRNA reads...

Hello,
I was trying to filter out rRNA reads using the command like this:

where ribokmers.fa.gz is taken from Brian's googledrive link posted at https://www.biostars.org/p/159959/
I noticed...
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