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Search: Posts Made By: Mizzou55
Forum: Bioinformatics 09-22-2016, 01:23 PM
Replies: 347
Views: 185,353
Posted By Mizzou55
Hi Brian, In this case I'm trying to trim...

Hi Brian,

In this case I'm trying to trim vector and low qual from Sanger (BAC End Seq) reads (~850bp) to run through SSPACE. Will your script have problems with this?
Forum: Bioinformatics 09-12-2016, 06:54 PM
Replies: 347
Views: 185,353
Posted By Mizzou55
Thanks for the quick response. I'll give it a try.

Thanks for the quick response. I'll give it a try.
Forum: Bioinformatics 09-09-2016, 12:04 PM
Replies: 347
Views: 185,353
Posted By Mizzou55
Hi, I'm trying to trim fasta reads w/ quals but...

Hi, I'm trying to trim fasta reads w/ quals but get this error.

Thanks,

Pat

~pminx/bin/bbmap/bbduk.sh in=Cat_BES_325_500.fasta qfin=Cat_BES_325_500.qual out=Cat_BES_325_500_trim.fa...
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