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Search: Posts Made By: SylvainL
Forum: Bioinformatics 01-12-2017, 09:11 PM
Replies: 347
Views: 185,353
Posted By SylvainL
Hi Brian, if I do NOT set maxlength=1, the...

Hi Brian,

if I do NOT set maxlength=1, the output is only reads shorter than 10 after trimming
if I set maxlength=1, I can get the normal output, i-e reads around 40-50bp after trimming...

I...
Forum: Bioinformatics 01-12-2017, 06:50 AM
Replies: 347
Views: 185,353
Posted By SylvainL
Ubuntu 12.04 server... :( java version...

Ubuntu 12.04 server... :(
java version "1.7.0_121"
OpenJDK Runtime Environment (IcedTea 2.6.8) (7u121-2.6.8-1ubuntu0.12.04.1)
OpenJDK 64-Bit Server VM (build 24.121-b00, mixed mode)
Forum: Bioinformatics 01-12-2017, 05:55 AM
Replies: 347
Views: 185,353
Posted By SylvainL
Ok, thanks for all this effort. I really don't...

Ok, thanks for all this effort. I really don't catch it. Now, it's running with maxlength=1 and I get the expected results.
Quite weird :)
Forum: Bioinformatics 01-12-2017, 05:36 AM
Replies: 347
Views: 185,353
Posted By SylvainL
I am using BBDuk version 36.84, I guess that's...

I am using BBDuk version 36.84, I guess that's the main difference...
Forum: Bioinformatics 01-12-2017, 05:19 AM
Replies: 347
Views: 185,353
Posted By SylvainL
Yes I know... As I edited, it works only if...

Yes I know...

As I edited, it works only if I set maxlength=1 !!

At least for the version I downloaded this morning ;)
Forum: Bioinformatics 01-12-2017, 04:17 AM
Replies: 347
Views: 185,353
Posted By SylvainL
Hi Brian, I also have a question. I downloaded...

Hi Brian,
I also have a question. I downloaded today the latest version of BBmap and I have a strange behaviour with left- and right-trimming

For example:...
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