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Forum: Bioinformatics 09-08-2014, 01:00 PM
Replies: 347
Views: 185,353
Posted By biodan
Thanks for the tip Brian. The files are indeed...

Thanks for the tip Brian. The files are indeed pairs, the 'clean' files were generated by trimming the adapters (commands shown below) from parent files which have been previously, successfully...
Forum: Bioinformatics 09-08-2014, 08:08 AM
Replies: 347
Views: 185,353
Posted By biodan
Hi Brian, Thanks for the bbduk tool, it is...

Hi Brian,

Thanks for the bbduk tool, it is indeed very fast. I just downloaded bbmap today (Aug29 release), and get errors when i try to process a pair of files in 1 line:

/opt/bbmap/bbduk.sh...
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