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Forum: Bioinformatics 07-12-2018, 09:24 PM
Replies: 347
Views: 185,363
Posted By kokyriakidis
Different Libraries

In SplitNextera guide it states that it it different from LMP. Nextera mate pair is not the same as Mate pair library v2 and also, Mate pair library v2 does not have these LMP adapters you mentioned!...
Forum: Bioinformatics 07-12-2018, 04:24 AM
Replies: 347
Views: 185,363
Posted By kokyriakidis
Genomax, do we have to trim Mate pair reads...

Genomax, do we have to trim Mate pair reads differently? I ask because they have the internal adapter. I am not asking about the Nextera mate pair. I ask for the reads made by MatePairSamplePrep v2....
Forum: Bioinformatics 07-08-2018, 12:02 PM
Replies: 347
Views: 185,363
Posted By kokyriakidis
trimming Long and Short

Hi, do I need to follow a different approach in trimming and filtering Short vs long mate pair reads (Nextera)? And if yes could someone elaborate the pipeline?
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