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Forum: Bioinformatics 09-15-2017, 05:11 AM
Replies: 347
Views: 185,363
Posted By jazz710
The BBDuk commands don't have '-' before them....

The BBDuk commands don't have '-' before them. Your command should read:

bbduk.sh in=input.fq out=output.fq maxlength=10

Give that a shot?
Forum: Bioinformatics 03-11-2015, 07:52 AM
Replies: 347
Views: 185,363
Posted By jazz710
I'd like to make a brief suggestion, thought it's...

I'd like to make a brief suggestion, thought it's obviously not important in the grand scheme.

I thought it would be nice if there was a batch setting for BBDuk. Currently, I have 48 fastq files...
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