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Forum: Bioinformatics 04-24-2015, 02:02 PM
Replies: 347
Views: 185,363
Posted By nepossiver
Thanks for the response, I understand your...

Thanks for the response, I understand your reasoning. I guess I could call bbduk twice to do a "two-pass" trimming, first trimming by minlen only, then adapters+minlen. As BBTools are so fast it does...
Forum: Bioinformatics 04-17-2015, 04:52 PM
Replies: 347
Views: 185,363
Posted By nepossiver
I've started to experiment with BBDuk, and I...

I've started to experiment with BBDuk, and I would like some help understanding the output. Initially I understood "KTrimmed" as the results of kmer adapter removal, but after playing a bit it seems...
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