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Search: Posts Made By: phylloxera
Forum: Bioinformatics 05-18-2017, 06:06 AM
Replies: 347
Views: 185,363
Posted By phylloxera
re: different results from command line and geneious plugin

Yes, the adapters files are different. Geneious says using All Truseq, Nextera, and PhiX adapters (152) sequences. The count in the resources folder of bbmap is 154 sequences. I don't know which 2...
Forum: Bioinformatics 05-17-2017, 12:46 PM
Replies: 347
Views: 185,363
Posted By phylloxera
Getting different results with bbduk command line vs geneious plugin

Hi,

I have been searching the default settings in the command line and still haven't identified the source of the discrepancy... Here is my linux command:

sh ~/bbmap/bbduk.sh...
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