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Forum: Bioinformatics 09-17-2017, 10:01 PM
Replies: 347
Views: 185,363
Posted By EssigSchurke
Thanks for the fast response. I will try reformat.

Thanks for the fast response. I will try reformat.
Forum: Bioinformatics 09-15-2017, 06:31 AM
Replies: 347
Views: 185,363
Posted By EssigSchurke
Yes, I want to exclude large reads, but I tested...

Yes, I want to exclude large reads, but I tested the command provided by jazz710. It produces the same result, the test read is still in the output.
Forum: Bioinformatics 09-15-2017, 05:35 AM
Replies: 347
Views: 185,363
Posted By EssigSchurke
Hi cuencam, minlength=10 filters only reads...

Hi cuencam,

minlength=10 filters only reads shorter 10bp. I want to filter reads longer 10bp, whereas 10bp is only a dummy for my test case.
Forum: Bioinformatics 09-15-2017, 05:15 AM
Replies: 347
Views: 185,363
Posted By EssigSchurke
With or without "-" does not matter, I get same...

With or without "-" does not matter, I get same results.
Forum: Bioinformatics 09-15-2017, 04:45 AM
Replies: 347
Views: 185,363
Posted By EssigSchurke
Hi Brian, I tried to filter reads longer...

Hi Brian,

I tried to filter reads longer 10bp. I used the following command:

bbduk.sh -in=input.fq -out=output.fq -maxlength=10

However, nothing happens, I get the same amount of reads as in...
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