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Forum: Bioinformatics 04-19-2017, 03:30 AM
Replies: 347
Views: 185,363
Posted By mslider
okay good, thanks for your help.

okay good, thanks for your help.
Forum: Bioinformatics 04-18-2017, 12:51 PM
Replies: 347
Views: 185,363
Posted By mslider
--Hi, thank you for your answer, just a...

--Hi,

thank you for your answer, just a question about quality check:
trimq=14 means an average quality in a sliding window such as in Trimmomatic with SLIDINGWINDOW:4:15 or not ?

best -
Forum: Bioinformatics 04-18-2017, 03:31 AM
Replies: 347
Views: 185,363
Posted By mslider
--Hi, i have a big difference between...

--Hi,

i have a big difference between results using bbduk.sh and trimmomatic trimming single-end reads, i have used the commands below, trimmomatic kept 99.78% survival reads whereas bbduk 91.76%....
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