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Search: Posts Made By: cnicolas
Forum: Bioinformatics 04-11-2017, 09:25 AM
Replies: 347
Views: 185,363
Posted By cnicolas
just 2.4% by trimming at 27. i do not know if...

just 2.4% by trimming at 27. i do not know if it's a good average for a 2x300bp, MiSeq 16s and a metaprofilig of another marker
Forum: Bioinformatics 04-11-2017, 08:59 AM
Replies: 347
Views: 185,363
Posted By cnicolas
results : java -ea -Xmx13352m -cp...

results :
java -ea -Xmx13352m -cp /data/umb/cichocki/bbmap/current/ jgi.SplitPairsAndSingles rp in1=/data/umb/cichocki/project2/bbduckdu11avril/project2_R1.fastq...
Forum: Bioinformatics 04-11-2017, 08:02 AM
Replies: 347
Views: 185,363
Posted By cnicolas
Dear GenoMax, Thank for your answer. I...

Dear GenoMax,

Thank for your answer.

I do it and come back here asap.

Best regards,

Nicolas
Forum: Bioinformatics 04-11-2017, 07:44 AM
Replies: 347
Views: 185,363
Posted By cnicolas
Dear Brian, I would like to try your...

Dear Brian,

I would like to try your bioinformatic tools but I have some troubles with the files which are generated.

I just want to filter my MiSeq sequences by reads which score at >30 wit...
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