SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 5 of 5
Search took 0.00 seconds.
Search: Posts Made By: cursecatcher
Forum: Bioinformatics 05-06-2018, 04:49 PM
Replies: 1
Views: 950
Posted By cursecatcher
Solved, I was using indexed files (.bai and...

Solved,
I was using indexed files (.bai and .fai) instead of proper files.
No comment.
Forum: Bioinformatics 05-06-2018, 08:40 AM
Replies: 1
Views: 950
Posted By cursecatcher
Dictionary size problem in Picard HsMetrics

Hi everyone,

I'm following a Roche pipeline for the analysis of targeted bisulfite sequencing data and I'm in trouble with Picard CalculateHsMetrics.

I create the indexed reference file with...
Forum: Bioinformatics 05-04-2018, 02:20 PM
Replies: 4
Views: 1,880
Posted By cursecatcher
It works, thank you so much!! I'm sorry for...

It works, thank you so much!!
I'm sorry for the triviality of the problem, but I'm not very practical with this stuff and the bedtools message wasn't very helpful.
Again, thank you!

Best...
Forum: Bioinformatics 05-04-2018, 12:26 PM
Replies: 4
Views: 1,880
Posted By cursecatcher
Hi Richard, thanks for the reply. About your...

Hi Richard, thanks for the reply.
About your question, I think not.

In the bed file I have record like this:

chr1 11123000 11123242 chr1:11123018-11123218
chr1 16696418 ...
Forum: Bioinformatics 05-04-2018, 11:06 AM
Replies: 4
Views: 1,880
Posted By cursecatcher
Unhappy Unable to intersect BAM file with bedtools

Hi everyone, I'm trying to use bedtools intersect to check the number of mapped reads in target regions (in a .bed file) originated by targeted bisulfite sequencing experiment (EpiSeq Roche).

I...
Showing results 1 to 5 of 5

 


All times are GMT -8. The time now is 05:30 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO