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Forum: Bioinformatics 11-21-2008, 07:25 AM
Replies: 236
Views: 586,450
Posted By JKing
You're right...

Agreed, I was too simplistic in my critique of MAQ for a next-generation sequencing board. Aligners can exceed 2 mismatches in certain situations, but in general the rule is that >2 mismatches lead...
Forum: Bioinformatics 11-20-2008, 05:59 PM
Replies: 236
Views: 586,450
Posted By JKing
SeqMan NGen

Update: I visit this site quite a bit to understand the tools available and where this technology is taking us, but I haven't actually posted in some time. Here's an update if you are interested in...
Forum: Bioinformatics 05-29-2008, 05:38 PM
Replies: 236
Views: 586,450
Posted By JKing
Nice to meet you, Eco

Thanks for the warm welcome, Eco. This site is poised to be a valuable base of knowledge for all of us who are highly interested in this technology.

The best way for visitors of this site to get...
Forum: Bioinformatics 05-28-2008, 05:15 PM
Replies: 236
Views: 586,450
Posted By JKing
Sga

Another couple of tools:

SeqMan Genome Assembler -- an assembler (as opposed to a templated read aligner) of Illumina, 454, and/or Sanger single read and paired end data. Output as .ace...
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