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Search: Posts Made By: ewilbanks
Forum: Bioinformatics 10-27-2009, 10:33 AM
Replies: 236
Views: 586,450
Posted By ewilbanks
Try TopHat http://tophat.cbcb.umd.edu/ It...

Try TopHat http://tophat.cbcb.umd.edu/

It uses Bowtie to map reads and analyzes the mapping results to identify splice junctions between exons.
Forum: Bioinformatics 08-19-2009, 09:44 AM
Replies: 236
Views: 586,450
Posted By ewilbanks
I don't think that CisGenome has support for...

I don't think that CisGenome has support for bowtie output yet. Best bet would be to find scripts to convert to .bed or .aln :)
Forum: Bioinformatics 05-08-2009, 05:35 PM
Replies: 236
Views: 586,450
Posted By ewilbanks
Any more ChIP-seq analysis tools that we should...

Any more ChIP-seq analysis tools that we should add here?

Also, does anyone know if the program from the Poisson mixture method paper is publicly available?:
...
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