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Search: Posts Made By: entrez
Forum: Bioinformatics 01-08-2015, 06:20 PM
Replies: 2
Views: 1,164
Posted By entrez
Thank you, Pymol looks like a good tool. Will try...

Thank you, Pymol looks like a good tool. Will try it out for the 3d structure.
Anyone knows database and visualization tools for mapping genetic variants to protein domains?
Forum: Bioinformatics 01-08-2015, 08:10 AM
Replies: 2
Views: 1,164
Posted By entrez
Map genetic variants to protein domain/structure

I got some genetic mutations or variants from exome sequencing data analysis. I am trying to map genetic mutations/variants to protein domain/structure. Ideally, I want to visualize the variants in...
Forum: Bioinformatics 03-30-2014, 08:00 AM
Replies: 92
Views: 35,856
Posted By entrez
Thanks for the input. I agree on your feeling on...

Thanks for the input. I agree on your feeling on these two packages. Do you see differences in the results using GAGE and GOseq?
Forum: Bioinformatics 03-28-2014, 06:13 PM
Replies: 92
Views: 35,856
Posted By entrez
Have you compared GAGE vs other gene set analysis...

Have you compared GAGE vs other gene set analysis methods like GOseq etc?
Forum: Bioinformatics 10-27-2013, 04:21 PM
Replies: 92
Views: 35,856
Posted By entrez
Can I use the workflow (with necessary changes)...

Can I use the workflow (with necessary changes) for microarray data analysis? If so, how?
Forum: Bioinformatics 10-23-2013, 05:30 AM
Replies: 92
Views: 35,856
Posted By entrez
gage 2.10.0, pathview 1.1.4 and Bioconductor 2.12

gage 2.10.0, pathview 1.1.4 and Bioconductor 2.12
Forum: Bioinformatics 10-22-2013, 12:58 PM
Replies: 92
Views: 35,856
Posted By entrez
Iíve both gage and pathview installed on my...

Iíve both gage and pathview installed on my computer. I tried to follow the example in the native workflow. Things work well, except I didnít get 4 samples show up in the same graph (or nodes with 4...
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