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Search: Posts Made By: tamu_anand
Forum: Bioinformatics 08-09-2019, 06:47 AM
Replies: 8
Views: 1,076
Posted By tamu_anand
Thanks Colindaven and dcameron for your inputs -...

Thanks Colindaven and dcameron for your inputs - very much appreciated.
Forum: Bioinformatics 07-22-2019, 09:09 AM
Replies: 8
Views: 1,076
Posted By tamu_anand
Thanks GenoMax and RobP for your valuable inputs....

Thanks GenoMax and RobP for your valuable inputs.

RobP - I totally agree with you on all you have said - the most important being the last bullet below:


my filter for deciding to use a tool...
Forum: Bioinformatics 07-21-2019, 01:44 PM
Replies: 4
Views: 668
Posted By tamu_anand
Hi all Any inputs/recommendations on the...

Hi all

Any inputs/recommendations on the bbmap command line I am using - Post 3

Thanks in advance
Forum: Bioinformatics 07-21-2019, 11:47 AM
Replies: 8
Views: 1,076
Posted By tamu_anand
heavily used bionformatics software without publications

Hi all

I am curious to know from the Bioinformatics/Genomics/CompBio research community about popular or heavily used software that are not published?

In my opinion, BBTools from DOE JGI...
Forum: Bioinformatics 07-17-2019, 08:30 PM
Replies: 4
Views: 668
Posted By tamu_anand
Thanks @GenoMax for pointing me to the bbsplit...

Thanks @GenoMax for pointing me to the bbsplit thread (http://seqanswers.com/forums/showthread.php?t=41288)

To elaborate, I would like to remove chloroplast/rDNA/mito contaminants and I was...
Forum: Bioinformatics 07-16-2019, 12:00 PM
Replies: 4
Views: 668
Posted By tamu_anand
Has anyone used BBTools package to remove contaminants

I would like to remove mitochondrial, chloroplast and rDNA contaminants from read data using BBTools - I was wondering if anyone has used BBTools to do this and can share the generic pipeline.
...
Forum: Bioinformatics 06-03-2019, 12:46 AM
Replies: 674
Views: 170,654
Posted By tamu_anand
Has anyone used bbmap for QuantSeq Data Analysis...

Has anyone used bbmap for QuantSeq Data Analysis (more precisely the QuantSeq FWD protocol). The Lexogen website (https://www.lexogen.com/quantseq-data-analysis/) recommends bbduk for quality...
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