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Search: Posts Made By: yangjr
Forum: Academic/Non-Profit Jobs 01-04-2016, 04:34 PM
Replies: 0
Views: 904
Posted By yangjr
Postdoc Position in Evolutionary Genomics at University of Michigan (Jan2016)

A postdoctoral position is available immediately in the laboratory of Jianzhi “George” Zhang at University of Michigan, Ann Arbor, Michigan. The ideal candidate will use the budding yeast...
Forum: Academic/Non-Profit Jobs 12-15-2015, 06:12 PM
Replies: 1
Views: 1,422
Posted By yangjr
Recruiting Full-time researcher to Zhongshan School of Medicine, Sun Yat-sen Univ.

Zhongshan School of Medicine (SYSU-SOM) in Guangzhou, China, was established in 1866. As the oldest school of western medicine of China, SYSU-SOM is proud to stand among the top nationwide. SYSU-SOM...
Forum: Academic/Non-Profit Jobs 11-03-2015, 06:43 PM
Replies: 0
Views: 1,216
Posted By yangjr
Two Postdoctoral Positions in Evolutionary Genomics at University of Michigan (Nov201

Two postdoctoral positions are available in the laboratory of Jianzhi “George” Zhang at University of Michigan, Ann Arbor, Michigan.

Position I: Computational evolutionary genomics
The ideal...
Forum: Bioinformatics 08-14-2013, 07:36 AM
Replies: 3
Views: 3,605
Posted By yangjr
Making sense of tophat output "align_summary.txt"

I run tophat2 with “-g 20" on some data. As a result, the "align_summary.txt" says


Then I run some manual checking on the numbers by using samtools on the output "accepted_hits.bam" and...
Forum: Bioinformatics 03-14-2013, 09:20 AM
Replies: 3
Views: 2,115
Posted By yangjr
Same problem here

I think Irina actually means she's expecting something like this:

#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Sample1
chr1 20729 C T,A . PASS DP=10 GT:GQP 0/1:2:10
chr1 73935 G A,T . PASS...
Forum: Bioinformatics 01-09-2013, 11:36 AM
Replies: 14
Views: 26,122
Posted By yangjr
A better but more complex way is 1. Ask bowtie...

A better but more complex way is
1. Ask bowtie to generate all hits.
2. Take the hits that are uniquely best, estimate a "hit density" for single site
3. Take the multiple hits, divide their...
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