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Search: Posts Made By: aliealexandre
Forum: Bioinformatics 02-27-2011, 03:13 PM
Replies: 8
Views: 5,452
Posted By aliealexandre
Aparna, you have well understood. (I'm...

Aparna,

you have well understood. (I'm sorry about my horrible english, I'm a french frog;-))

I agree with you about xml format followed by sparsing with Perl. However if I do that (and I did)...
Forum: Bioinformatics 02-23-2011, 07:56 PM
Replies: 8
Views: 5,452
Posted By aliealexandre
Get fasta amino-acid BLAST result

Hi everybody,

I come here with a beginner question. Sorry.

I'm learning Perl and I begin using BioPerl.

This is the job I want to do : get full amino-acid sequences obtained by TblastN on...
Forum: Bioinformatics 02-20-2011, 08:22 PM
Replies: 20
Views: 24,026
Posted By aliealexandre
Great !! it works:) Thank you, kmcarr, for...

Great !! it works:)

Thank you, kmcarr, for your very helpfull and very understandable advices.

See you

Alex
Forum: Bioinformatics 02-17-2011, 05:53 PM
Replies: 22
Views: 74,148
Posted By aliealexandre
maubbp you're right, I should learn more about...

maubbp you're right, I should learn more about UNIX. I'm on this way now... Following your advices I succeed in accomplishing the makeblastdb command.

Thank you very much

Alex
Forum: Bioinformatics 02-17-2011, 05:51 PM
Replies: 20
Views: 24,026
Posted By aliealexandre
kmcarr These are some lines from the...

kmcarr

These are some lines from the blastdbcmd command :

BL_ORD_ID:0
BL_ORD_ID:1
BL_ORD_ID:2
BL_ORD_ID:3
BL_ORD_ID:4
BL_ORD_ID:5
Forum: Bioinformatics 02-17-2011, 01:29 AM
Replies: 20
Views: 24,026
Posted By aliealexandre
Hi everybody, Thank you, Anna, I wanted to...

Hi everybody,

Thank you, Anna, I wanted to ask exactly the same question !

Thank you, kmcarr, for you detailed answer. But even I rigourously followed your wy, I get the "no valide entries to...
Forum: Bioinformatics 02-17-2011, 12:25 AM
Replies: 22
Views: 74,148
Posted By aliealexandre
Thank you @maubp I copy the makeblastdb...

Thank you

@maubp I copy the makeblastdb binary file in the same folder than my database (NveProt) and it worked

In the same way, when I want to launch a blastp, for instance, I have to copy the...
Forum: Bioinformatics 02-15-2011, 01:16 AM
Replies: 22
Views: 74,148
Posted By aliealexandre
How to create a BLAST database

Hi everybody,

I'm new on this forum and of course, I come here because I have a problem... sorry.

I use Blast on macOSx

I want to create a protein database named NveProt. Then I created a...
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