Forum: Bioinformatics
11-28-2012, 12:32 PM
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Replies: 3
Views: 967
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Forum: Bioinformatics
11-28-2012, 12:13 PM
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Replies: 3
Views: 967
tophat output
From Tophat output "junctions.bed", we could know the position of junctions. I think this junction should be intron. But after I assembled tophat output by Cufflinks, I found that the position of...
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Forum: Bioinformatics
11-04-2012, 07:58 PM
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Replies: 2
Views: 1,499
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Forum: Bioinformatics
10-10-2012, 09:01 AM
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Replies: 1
Views: 1,622
Alternative Splicing isoform Annotation
Hello
I am trying to identify differential alternative splicing events across two conditions. Now I plan to use MISO. This package requires a alternative splicing event gff annotation.
So far...
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Forum: Bioinformatics
05-17-2011, 07:58 AM
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Replies: 3
Views: 2,733
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Forum: Bioinformatics
05-16-2011, 12:44 PM
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Replies: 3
Views: 2,733
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Forum: Bioinformatics
01-31-2011, 01:04 PM
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Replies: 1
Views: 2,535
how to identify paired end from qseq or fastq
I got data in qseq format. The description of this format says, column 7 is 1 for single read, 1 or 2 for paired end .
The problem is if the value is 1, it is impossible to indentify whether it is...
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Forum: Bioinformatics
01-28-2011, 12:58 PM
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Replies: 1
Views: 2,227
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Forum: Bioinformatics
01-28-2011, 11:19 AM
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Replies: 1
Views: 2,227
generate data from ewbt file
hi all
Now I have installed tophat 1.2.0,and downloaded homo sapien indexes. What should I do next? How to generate *.fa file?
thx
I have just begun to use tophat
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