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Search: Posts Made By: delphi_ote
Forum: Bioinformatics 06-30-2011, 09:30 AM
Replies: 10
Views: 6,040
Posted By delphi_ote
Your script just saved my bacon. Thank you SO...

Your script just saved my bacon. Thank you SO much for this!!!
Forum: Sample Prep / Library Generation 05-09-2011, 10:31 AM
Replies: 6
Views: 4,343
Posted By delphi_ote
Every time I ask people who do the hard work, I...

Every time I ask people who do the hard work, I always learn the real story. Thanks so much, gogreen and pmiguel. Clearly, this community was the right one to ask!

Do you know if any of these...
Forum: Sample Prep / Library Generation 05-07-2011, 07:58 AM
Replies: 6
Views: 4,343
Posted By delphi_ote
Thank you so much, krobison! That was incredibly...

Thank you so much, krobison! That was incredibly informative, and pointed me toward a lot of good resources. I really appreciate it.
Forum: Sample Prep / Library Generation 05-06-2011, 12:15 PM
Replies: 6
Views: 4,343
Posted By delphi_ote
Are Illumina library fragment lengths actually normally distributed?

I see in many bioinformatics papers assumptions that the fragment lengths for Illumina data are be normally distributed. I've seen some datasets for which this doesn't seem to be the case, however. ...
Forum: Genomic Resequencing 05-04-2011, 09:22 PM
Replies: 3
Views: 4,861
Posted By delphi_ote
Sorry. I said "fragment size" here somewhat...

Sorry. I said "fragment size" here somewhat carelessly. I really mean "insert size".
Forum: Genomic Resequencing 05-04-2011, 08:51 PM
Replies: 3
Views: 4,861
Posted By delphi_ote
Illumina fragment length distribution

I'm trying to characterize the fragment length distribution of some Illumina data from the 1000 Genomes Project.

To do this, I downloaded the supplied BAM files (reads aligned with MAQ) for the...
Forum: Bioinformatics 04-30-2011, 12:59 PM
Replies: 13
Views: 16,321
Posted By delphi_ote
Great news! :)

Great news! :)
Forum: Bioinformatics 02-01-2011, 08:28 AM
Replies: 13
Views: 16,321
Posted By delphi_ote
Since MosaikText doesn't properly deal with...

Since MosaikText doesn't properly deal with clipping (http://code.google.com/p/mosaik-aligner/issues/detail?id=69) when converting to SAM/BAM format, I wouldn't recommend it for this application. ...
Forum: De novo discovery 10-24-2010, 01:35 PM
Replies: 2
Views: 3,795
Posted By delphi_ote
I'm also new, but I believe the N50 computation...

I'm also new, but I believe the N50 computation is done by SOAPdenovo automatically output to stdout.
Showing results 1 to 9 of 9

 


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