Forum: Bioinformatics
10-23-2014, 05:12 PM
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Replies: 0
Views: 1,106
method for superscaffolding
We have a eukaryotic diploid genome assembled and scaffolded using ALLPATHS-LG. In addition, we have a linkage map generated from iso-crossing individuals and performing reduced-representation...
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Forum: Academic/Non-Profit Jobs
08-28-2012, 10:19 PM
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Replies: 0
Views: 1,874
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Forum: Bioinformatics
12-17-2010, 12:53 PM
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Replies: 0
Views: 1,201
Arachne folder structure
I was curious if anyone could help me out with setting up the folder structure for input data into Arachne, it seems a little complicated and I am not getting to much help from the Broad wiki. I am...
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Forum: 454 Pyrosequencing
07-15-2010, 12:37 PM
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Replies: 5
Views: 4,704
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Forum: 454 Pyrosequencing
07-14-2010, 02:26 PM
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Replies: 5
Views: 4,704
Memory Usage in Newbler 2.3
I am using Newbler 2.3 on a 8 core workstation with 64 gb memory (running Ubuntu). It seems that during my newbler assemblies, memory usage is limited to ~20 gb. Is there some reason newbler wont...
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Forum: Academic/Non-Profit Jobs
07-07-2010, 02:26 PM
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Replies: 0
Views: 2,742
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