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Forum: Bioinformatics 03-21-2017, 01:35 AM
Replies: 2
Views: 7,196
Posted By olavur
This is the correct way to convert VCF to the...

This is the correct way to convert VCF to the Plink PED format using VCFtools. Your problem lies elsewhere (I can't help you with WGAViewer, unfortunately).
Forum: Bioinformatics 03-15-2017, 06:43 AM
Replies: 0
Views: 1,164
Posted By olavur
Spurious dosage coefficient of determination in imputed VCF file

I have a VCF file that has dosage r^2 in the info field. The problem is that while the r^2 value should be in the 0 to 1 range, it has both negative values and values above 1.

Is there a...
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