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Forum: De novo discovery 08-16-2019, 11:25 AM
Replies: 7
Views: 1,230
Posted By guineverelee
Hi GenoMax and all I am unable to re-define...

Hi GenoMax and all

I am unable to re-define my velveth MAXKMERLENGTH. It is currently at default 31. Please see error message below. Any clue what's going on? Thanks again!!

$ cd...
Forum: De novo discovery 08-14-2019, 02:10 PM
Replies: 7
Views: 1,230
Posted By guineverelee
SNPsaurus, thanks for the suggestion. We don't...

SNPsaurus, thanks for the suggestion. We don't have immediate access to PacBio, but I'll keep that in mind!
Forum: De novo discovery 08-14-2019, 01:15 PM
Replies: 7
Views: 1,230
Posted By guineverelee
Thank you GenoMax! The thread you pointed to is...

Thank you GenoMax! The thread you pointed to is super useful.
Forum: De novo discovery 08-13-2019, 04:07 PM
Replies: 7
Views: 1,230
Posted By guineverelee
Thank you GenoMax! I'll give Tadpole a try. ...

Thank you GenoMax!
I'll give Tadpole a try.
As for Velvet: Please excuse my newbie question. How do I make Velvet go through an entire range of k-mers?
Forum: De novo discovery 08-13-2019, 03:27 PM
Replies: 7
Views: 1,230
Posted By guineverelee
de novo assembly using Velvet to reconstruct a PCR amplicon

Hi all. I'm a newbie in de novo assembly. I have successfully installed Velvet, was able to get it to read my fastq and run of my test set, but it is not giving me the expected result.

This...
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