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Forum: Clinical Sequencing 09-05-2013, 07:49 AM
Replies: 0
Views: 4,674
Posted By ngsAnalytics
Clinical Sequencing IT

Hi all,

I am looking for some information around how institutions are handling their clinical sequencing data.

1) Are outsourcing the analysis? If not are you using a commercial tool or home...
Forum: RNA Sequencing 07-30-2012, 06:59 AM
Replies: 0
Views: 1,422
Posted By ngsAnalytics
Differential Expression Best Practices


I am compiling a list of papers that represent the best practices for RNA-seq analysis. I would like to find papers that have well documented procedures and clearly defined goals and results....
Forum: RNA Sequencing 04-29-2012, 03:38 PM
Replies: 10
Views: 4,496
Posted By ngsAnalytics
Hi, I would start by checking that the...


I would start by checking that the ExonContSet (ecs) was built correctly.

A couple of things to try

design(ecs) - This should match what you intended.

sampleNames(ecs) - the row...
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