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Forum: Bioinformatics 09-09-2019, 02:10 AM
Replies: 4
Views: 1,702
Posted By costanza
@SNPsaurus: We are working at a lab where we also...

@SNPsaurus: We are working at a lab where we also have experts on C++, and we have also some significant expertise on Java. We were very careful to ensure that for each language, we have used its...
Forum: Bioinformatics 09-06-2019, 02:53 AM
Replies: 4
Views: 1,702
Posted By costanza
We have just published a small follow-up paper to...

We have just published a small follow-up paper to this in August: Comparing Ease of Programming in C++, Go, and Java for Implementing a Next-Generation Sequencing Tool...
Forum: Bioinformatics 06-04-2019, 04:30 AM
Replies: 4
Views: 1,702
Posted By costanza
Comparison of programming languages for NGS tools

We have just published a paper about comparing Go, Java, and C++ for implementing our sequencing tool elPrep in BMC Bioinformatics.

elPrep is available at https://github.com/exascience/elprep
...
Forum: Bioinformatics 02-15-2019, 02:05 AM
Replies: 1
Views: 862
Posted By costanza
elPrep 4 paper on PLOS ONE

We have just published a paper about elPrep 4 on PLOS ONE.

Title: elPrep 4: A multithreaded framework for sequence analysis

URL: https://doi.org/10.1371/journal.pone.0209523

Abstract: We...
Forum: Bioinformatics 12-12-2018, 05:15 AM
Replies: 1
Views: 1,263
Posted By costanza
We have now published a preprint of an upcoming...

We have now published a preprint of an upcoming paper about elPrep 4.0.0 on bioaRxiv at https://doi.org/10.1101/492249 with more details.
Forum: Bioinformatics 10-22-2018, 02:51 AM
Replies: 1
Views: 1,263
Posted By costanza
[Announcement] elPrep v4.0.0 released

We are happy to announce the release of elPrep v4.0.0. elPrep is an open-source, drop-in replacement tool for GATK4/Picard/SAMtools for preparing SAM/BAM files for variant calling that produces...
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