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Forum: Bioinformatics 10-26-2013, 05:52 PM
Replies: 2
Views: 1,291
Posted By min1204
This protocol is very useful. Trapnell, C.,...

This protocol is very useful.

Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D.R., Pimentel, H., Salzberg, S.L., Rinn, J.L., and Pachter, L. (2012). Differential gene and...
Forum: Bioinformatics 10-26-2013, 05:28 AM
Replies: 17
Views: 10,578
Posted By min1204
Hi maubp, I re-configured the bcl2fastq. Although...

Hi maubp, I re-configured the bcl2fastq. Although it said configuration was successful.

-- Found X11 header: /usr/include/X11/X.h
-- Found X11 library: /usr/lib64/libX11.so
-- Found LibXml2:...
Forum: Bioinformatics 10-26-2013, 04:38 AM
Replies: 17
Views: 10,578
Posted By min1204
Thank you very much. I have installed all...

Thank you very much.

I have installed all the softwares listed in the PDF document . I also tried RPM file.

[root@localhost software]# rpm -i bcl2fastq-1.8.4-Linux-x86_64.rpm
error: Failed...
Forum: Bioinformatics 10-26-2013, 04:04 AM
Replies: 17
Views: 10,578
Posted By min1204
Yes, I have installed boost-devel. ...

Yes, I have installed boost-devel.

[root@localhost ~]# yum install boost-devel
Loaded plugins: fastestmirror, refresh-packagekit
Loading mirror speeds from cached hostfile
Setting up Install...
Forum: Bioinformatics 10-26-2013, 03:34 AM
Replies: 17
Views: 10,578
Posted By min1204
Hi Peter, thank you for your answer. But BOOST...

Hi Peter, thank you for your answer.
But BOOST has been installed. You see,

[root@localhost ~]# yum install boost
Loaded plugins: fastestmirror, refresh-packagekit
Loading mirror speeds from...
Forum: Bioinformatics 10-26-2013, 01:53 AM
Replies: 17
Views: 10,578
Posted By min1204
The system is CentOS 6.4

The system is CentOS 6.4
Forum: Bioinformatics 10-26-2013, 01:52 AM
Replies: 3
Views: 5,736
Posted By min1204
The system is centOS 6.4

The system is centOS 6.4
Forum: Bioinformatics 10-26-2013, 01:45 AM
Replies: 17
Views: 10,578
Posted By min1204
install bcl2fastq-1.8.4

Hi everyone,

I'm trying to install illumina's software bcl2fastq-1.8.4, but there are some problems that I can't resolve. Hope someone can help me.

First, I installed it using...
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