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Forum: Bioinformatics 07-07-2014, 05:53 AM
Replies: 24
Views: 12,339
Posted By sdmoore
Thanks Brian and dpryan. I had to give up on...

Thanks Brian and dpryan.
I had to give up on bbmap for now, not for this problem (I found the AddOrReplaceReadGroups tool later: I edited the sams or the bams). Rather, the resulting vcf from...
Forum: Bioinformatics 07-05-2014, 09:25 AM
Replies: 24
Views: 12,339
Posted By sdmoore
Possible to add Read Group in BBmap header?

*sorry, probably wrong thread, I found more activity in the release announcement thread*

Hello,
I used BBduk to process my read pairs and then mapped them using BBmap, then sam/bam and sorted.
I...
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