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Search: Posts Made By: muol
Forum: Bioinformatics 06-27-2014, 04:11 PM
Replies: 24
Views: 12,339
Posted By muol
Excellent, just did a test run. This is very...

Excellent, just did a test run. This is very useful software!

Olaf
Forum: Bioinformatics 06-23-2014, 07:14 PM
Replies: 24
Views: 12,339
Posted By muol
Thanks for the info Brian, it wasn't a big issue....

Thanks for the info Brian, it wasn't a big issue.

Olaf
Forum: Bioinformatics 06-23-2014, 05:07 PM
Replies: 24
Views: 12,339
Posted By muol
Brian, I ran into a smaller issue with...

Brian,

I ran into a smaller issue with bbnorm. When trying to input and output separate files for a PE library like this:

bbnorm.sh in1=R1.fastq.gz in2=R2.fastq.gz out1=R1.bbnorm.fastq.gz...
Forum: Bioinformatics 06-23-2014, 03:54 PM
Replies: 24
Views: 12,339
Posted By muol
Indeed, just tried it and it works well with...

Indeed, just tried it and it works well with bbnorm.

Thanks
Olaf
Forum: Bioinformatics 06-23-2014, 03:28 PM
Replies: 24
Views: 12,339
Posted By muol
Hi Brian, Is there an option to set read...

Hi Brian,

Is there an option to set read quality encoding in bbnorm? I had to set qin=33 in bbduk for some Illumina 1.9 paired end libraries, but this option doesn't seem to exist in bbnorm (used...
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