SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 7 of 7
Search took 0.00 seconds.
Search: Posts Made By: adeslat
Forum: Bioinformatics 02-15-2016, 05:56 AM
Replies: 6
Views: 5,913
Posted By adeslat
Dear all, I resolved this by running the...

Dear all,

I resolved this by running the gmap_build on a larger machine. I also got this error and chased down many paths, in the end it was as simple as needing more memory.

In my case, I was...
Forum: Bioinformatics 03-25-2011, 02:16 PM
Replies: 17
Views: 6,315
Posted By adeslat
scripture-beta.jar

Hi all,

The bug was overcome by running scripture-beta.jar file instead.

Problem solved!

Anne
Forum: Bioinformatics 03-24-2011, 11:32 AM
Replies: 17
Views: 6,315
Posted By adeslat
scripture bug ?

I have run scripture on my ABI solid paired end read data set after preparing it as instructed.

When running scripture I get an error unfortunately no output.

Note that the hg19_c.summary.txt...
Forum: Bioinformatics 03-24-2011, 09:40 AM
Replies: 0
Views: 1,178
Posted By adeslat
Matching Your Novel Seq against RNA Seq Data

I am looking to align some 40 dna sequences against an RNA-seq run that I've prepared using tophat and bowtie and I believe there must be a very simple way to see if these sequences show up in a...
Forum: SOLiD 03-20-2011, 10:41 PM
Replies: 5
Views: 4,067
Posted By adeslat
elsewhere documented errors with samtools

Hi Jon,

I was looking at "Scripture" and found looking through their course material at:

http://molecularevolution.org/resources/activities/scripture_activity

the following:

"There is...
Forum: SOLiD 03-11-2011, 06:51 AM
Replies: 5
Views: 4,067
Posted By adeslat
Smile Jon, Of all the people to reply -- thanks --...

Jon,
Of all the people to reply -- thanks -- I've been reading your various how-tos -- they are simply wonderful. Thank you -- I will do as you suggest and report back -- picard works better?
...
Forum: SOLiD 03-11-2011, 03:04 AM
Replies: 5
Views: 4,067
Posted By adeslat
Tophat paired end alignment.

Dear forum,

I have RNASeq SOLID data that is paired end. I want to use Tophat to perform the alignment. Does anyone out there know how to
ensure that "even if an end of a pair could not be...
Showing results 1 to 7 of 7

 


All times are GMT -8. The time now is 11:57 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO