Forum: Bioinformatics
02-15-2016, 05:56 AM
|
|
Replies: 6
Views: 5,913
Dear all,
I resolved this by running the...
Dear all,
I resolved this by running the gmap_build on a larger machine. I also got this error and chased down many paths, in the end it was as simple as needing more memory.
In my case, I was...
|
|
Forum: Bioinformatics
03-25-2011, 02:16 PM
|
|
Replies: 17
Views: 6,315
scripture-beta.jar
Hi all,
The bug was overcome by running scripture-beta.jar file instead.
Problem solved!
Anne
|
|
Forum: Bioinformatics
03-24-2011, 11:32 AM
|
|
Replies: 17
Views: 6,315
scripture bug ?
I have run scripture on my ABI solid paired end read data set after preparing it as instructed.
When running scripture I get an error unfortunately no output.
Note that the hg19_c.summary.txt...
|
|
Forum: Bioinformatics
03-24-2011, 09:40 AM
|
|
Replies: 0
Views: 1,178
Matching Your Novel Seq against RNA Seq Data
I am looking to align some 40 dna sequences against an RNA-seq run that I've prepared using tophat and bowtie and I believe there must be a very simple way to see if these sequences show up in a...
|
|
Forum: SOLiD
03-20-2011, 10:41 PM
|
|
Replies: 5
Views: 4,067
elsewhere documented errors with samtools
Hi Jon,
I was looking at "Scripture" and found looking through their course material at:
http://molecularevolution.org/resources/activities/scripture_activity
the following:
"There is...
|
|
Forum: SOLiD
03-11-2011, 06:51 AM
|
|
Replies: 5
Views: 4,067
Jon,
Of all the people to reply -- thanks --...
Jon,
Of all the people to reply -- thanks -- I've been reading your various how-tos -- they are simply wonderful. Thank you -- I will do as you suggest and report back -- picard works better?
...
|
|
Forum: SOLiD
03-11-2011, 03:04 AM
|
|
Replies: 5
Views: 4,067
Tophat paired end alignment.
Dear forum,
I have RNASeq SOLID data that is paired end. I want to use Tophat to perform the alignment. Does anyone out there know how to
ensure that "even if an end of a pair could not be...
|
