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Forum: Bioinformatics 04-25-2011, 01:24 PM
Replies: 26
Views: 14,111
Posted By pickw
Please try the c version from svn co...

Please try the c version from
svn co https://breakdancer.svn.sourceforge.net/svnroot/breakdancer breakdancer

The perl version is becoming obsolete.
Forum: Bioinformatics 12-22-2010, 10:42 AM
Replies: 6
Views: 4,356
Posted By pickw
Indeed. Not sure why this could have happened....

Indeed. Not sure why this could have happened. Which version are you using?
Forum: Bioinformatics 12-21-2010, 06:43 AM
Replies: 6
Views: 4,356
Posted By pickw
chr1 809757 17+0- chr12 38597545 3+17- CTX -149...

chr1 809757 17+0- chr12 38597545 3+17- CTX -149 99 17 NA|17

This means 17 plus (+) strand reads at chr1:809757 are discordantly mapped, 0 minus (-) strand reads at chr1:809757 are discordantly;...
Forum: Bioinformatics 03-23-2010, 11:37 AM
Replies: 3
Views: 3,134
Posted By pickw
In your command line example, %...

In your command line example,
% BreakDancerMax.pl -o -e -r 10 config.list > brd1.out

You need to specify a chromosome after the "-o", e.g. "-o 1" or "-o
chr1" depending on how you named your...
Forum: Bioinformatics 08-26-2009, 09:36 AM
Replies: 5
Views: 3,369
Posted By pickw
You can find it here

http://breakdancer.sourceforge.net/
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