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Forum: Bioinformatics 06-23-2010, 06:23 AM
Replies: 3
Views: 2,672
Posted By snp_analyser
Question still having the problem...

I filtered out alignments got from TOPHAT using bit 1 and 2 of the SAM flag (column 2), but am still encountering pairs mapped to different chromosomes. Any other way around this problem without...
Forum: Bioinformatics 06-15-2010, 06:53 AM
Replies: 4
Views: 5,307
Posted By snp_analyser
Thanks for the detailed reply!

Thanks for the detailed reply!
Forum: Bioinformatics 06-15-2010, 05:32 AM
Replies: 4
Views: 5,307
Posted By snp_analyser
Question I'm trying different settings of inner distance...

I'm trying different settings of inner distance for my experiments. Anybody out there with the answer as to which value is good?
Forum: Bioinformatics 06-07-2010, 07:38 AM
Replies: 0
Views: 2,221
Posted By snp_analyser
Exclamation Cufflinks sample file(test_data.sam) output

I installed boost 1_43_0 and then cufflinks version 0.8.2 on my server. I'm testing the version of cufflinks that I compiled from source on the sample file from the cufflinks website...
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