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Forum: Ion Torrent 02-11-2015, 01:56 PM
Replies: 11
Views: 8,963
Posted By n2hasan
Greetings Jade, It depends on the needs of...

Greetings Jade,

It depends on the needs of your experimental design and if you were doing this yourself. If you are looking for species identification instead of genus and family level...
Forum: Ion Torrent 01-29-2015, 09:44 AM
Replies: 11
Views: 8,963
Posted By n2hasan
Hello Jennifer, Is there something...

Hello Jennifer,

Is there something specifically that you are interested in? I have made some progress, although not as much as I had hoped, so I might not be able to answer you question(s). I...
Forum: Ion Torrent 12-17-2014, 10:51 AM
Replies: 11
Views: 8,963
Posted By n2hasan
Hello Jen, I thought the Qiime workflow has...

Hello Jen,

I thought the Qiime workflow has an option to use datasets composed of reads from multiple regions of the 16s sequence, something analogous to the method implemented in Emirge and...
Forum: Ion Torrent 12-15-2014, 09:32 AM
Replies: 11
Views: 8,963
Posted By n2hasan
Hey Jen, A colleague and myself are working...

Hey Jen,

A colleague and myself are working on trying the kit out and comparisons between it's workflow and Qiime. I'll let you know our experience as we make progress.

Best Regards,

Nabeeh
Forum: Bioinformatics 09-05-2009, 12:59 PM
Replies: 0
Views: 1,513
Posted By n2hasan
Getting Started

Our group has just got underway using the Roche 454 setup. One problem that I see is how to get the data, particularly de novo run data, into a format that can be put in a DB (CHADO schema) for...
Forum: Introductions 09-05-2009, 12:45 PM
Replies: 0
Views: 942
Posted By n2hasan
Greetings

Hello,

My name is Nabeeh. I am one of two graduate research assistants working with the newly acquired Roche 454-FLX and lightcycler for our Biology Department at New Mexico State University.
...
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